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This list and the pdf'
are for personal use only.
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Sub |
Kalkvik, H.M., I.J. Stout, T.J. Doonan, and C.L. Parkinson. Investigating patterns and processes of lineage diversification: phylogeography and niche modeling of Peromyscus maniculatus species group. Submitted to Evolution |
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2009
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Daza, J.M. , E.N. Smith, V. P. Páez and C.L. Parkinson. Complex evolution in the Neotropics: the origin and diversification of the widespread genus Leptodeira (Serpentes: Colubridae). Submitted to Molecular Phylogenetics and Evolution.  |
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2009
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Manjerovic, M. B., J. M. Waterman, E. A Hoffman, C. L. Parkinson. Characterization of nine microsatellite loci in the Cape ground squirrel, Xerus inauris , and their cross-utility in other species. Molecular Ecology Resources. |
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2009
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Metzger, G.A., Kraus, F. Allison, A. and C. L. Parkinson . Uncovering cryptic diversity in Aspidomorphus (Serpentes: Elapidae): evidence from mitochondrial and nuclear markers. Accepted Molecular Phylogenetics and Evolution. doi:10.1016/j.ympev.2009.07.027 |
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2009
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Suazo, A.A., J.E. Fauth, J.D. Roth, C.L, Parkinson, and I.J.Stout. Responses of small rodents to habitat restoration and management for the endangered Florida Scrub-Jay. Biological Conservation. |
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2009
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Castoe, T.A.,*, A.P.J. de Koning*, H-M Kim, W. Gu, B.P. Noonan, G. Naylor, Z.J. Jiang, C.L. Parkinson, and D.D.Pollock. Evidence for an ancient adaptive episode of convergent molecular evolution. Proceedings of the National Academy of Sciences U. S. A [*These authors contributed equally and should be considered joint primary authors] See Commentary by Scott Edwards |
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Submitted |
Reece, J.S, D.A. Bagley, S. Hirama, L. M. Ehrhart, and C. L. Parkinson. Juvenile green turtles (Chelonia mydas) preferentially recruit to foraging areas near to their
natal beaches: the local nature of threats and conservation. Submitted to Conservation Genetics |
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2009
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Fenwick, A., R.L. Gutberlet, J.A. Evans, and C.L. Parkinson. Morphological and molecular evidence for phylogeny and classification of
South American pitvipers, genera Bothrops, Bothriopsis, and
Bothrocophias (Serpentes: Viperidae). Zoological Journal of the Linnean Society. 156: 617–640. Supporting Material |
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Submitted
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Reece J. S. Alansari, A., AlKindi, A. Mahmoud, I., Al Kiyumi, A.Y., Elshafie, A., Kalkvik, H.M., and C.L. Parkinson. The Loggerhead Turtles of Oman: Multilocus Evidence for Interoceanic Gene Flow with Atlantic Rookeries. Submitted to the Journal of Heredity. |
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2009
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*Castoe, T.A., *Daza, J.M., Smith, E.N. Sasa, M.M., Kuch, U., Campbell, J.A., Chippindale, P.T. and C.L. Parkinson. Comparative Phylogeography of Pitvipers Suggests a Consensus of Ancient Middle American Highland Biogeography. NOTE featured Cover Issue. Journal of Biogeography 36:88-103 [*These authors contributed equally and should be considered joint primary authors]
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2007
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Castoe, T.A., E.N. Smith, R.M. Brown, and C.L. Parkinson. Higher-level phylogeny of Asian and American coralsnakes, their placement within the Elapidae (Squamata), and the systematic affinities of the enigmatic Asian coralsnake Hemibungarus calligaster. Zoological Journal of the Linnean Society 151:809-831. |
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2007
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Jiang, Z. / Castoe, T.A.* , C.C. Austin, F.T. Burbrink, M.D. Herron, J.A. McGuire, C.L. Parkinson, and D.D. Pollock. Comparative mitochondrial genomics of snakes: substitution rate dynamics and functionality of the duplicate control region. BMC-Evolutionary Biology. [*These authors contributed equally and should be considered joint primary authors] |
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2007
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Degner, J.F., I.J. Stout, J.D. Roth, and C. L. Parkinson. Population Genetics and Conservation of the Threatened Southeastern Beach Mouse ( Peromyscus polionotus niveiventris ): Subspecies and Evolutionary units. Submitted to Conservation Genetics 8:1441–1452
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2007
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Castoe, T.A., C.L. Spencer, and C. L. Parkinson. Phylogeographic Structure and Historical Demography of the Western Diamondback Rattlesnake ( Crotalus atrox ): a Perspective on North American Desert Biogeography. Molecular Phylogenetics and Evolution 43:193-212
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2006
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Castoe, T.A., C.L. Parkinson. Bayesian Mixed
models and the Phylogeny of Pitvipers (Viperidae: Serpentes).
Molecular Phylogenetics and Evolution 39:91-110. |
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2006
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Reece, J.S., L.M. Ehrhart, C.L. Parkinson.
Mixed Stock Analysis of Juvenile Loggerhead Turtles in the
Indian River Lagoon and Implications for Marine Turtle Conservation
Planning. Conservation Genetics 7:345-352 |
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2005
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Parkinson, C.L. JP Mower, Y-L Qiu, AJ Shirk,
K Song, ND Young, CW dePamphilis and JD Palmer. Multiple
Major Increases and Decreases in Mitochondrial Substitution
Rates in the Plant Family Geraniaceae. BMC
Evolutionary Biology 5:73 PDF
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2005
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Castoe, T.A., M.M. Sasa, and C.L. Parkinson.
Modeling Nucleotide Evolution at the Mesoscale: The Phylogeny
of the Neotropical Pitvipers of the Porthidium Group (Viperidae).
Molecular Phylogenetics and Evolution 37:881-898 |
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2005
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Wiens, J.J., , J.W. Fetzner, C.L. Parkinson,
and T.W. Reeder. Hylid Frog Phylogeny and Sampling Strategies
for Speciose Clades. Systematic Biology 54(5):719–748
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2005
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Herron, M.D., J.M. Waterman, and C.L. Parkinson.
Phylogeny and historical biogeography of African ground
squirrels: the role of climate change in the evolution of
Xerus. Molecular Ecology 14:2773-2788 |
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2005
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Mulvaney, A., T.A. Castoe,
K.G. Ashton, K.L. Krysko, and C.L. Parkinson. Population
genetic structure within the Florida worm lizard, Rhineura
floridana (Amphisbaenia: Rhineuridae): biogeographic,
taxonomic, and conservation implications. Journal of Herpetology
39:118-124. |
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Reece, J.S., T.A. Castoe,
and C.L. Parkinson. Historical Perspectives on Population
Genetics and Conservation of three Marine Turtle Species.
Conservation Genetics 6:235-251. |
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2004
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Castoe, T.A. , T.M. Doan,
and C.L. Parkinson. Data partitions and complex models in
Bayesian analysis: the phylogeny of gymnophthalmid lizards.
Systematic Biology 53:448-469. |
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2004
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Herrmann, H.W, T. Ziegler,
A. Malhotra, R. Thorpe, and C.L. Parkinson. Redescription
and systematics of Trimeresurus cornutus (Serpentes:
Viperidae) based on morphology and molecular data. Herpetologica.
60: 211-221 |
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2004
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Herron, M.D., T.A. Castoe, C.L. Parkinson.
Sciurid phylogeny and the paraphyly of Holarctic ground
squirrels (Spermophilus). Molecular Phylogenetics
and Evolution. 31: 1015-1030. |
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2003
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Castoe, T.A., P. Chippindale,
J. Campbell, L. K. Ammerman, and C. L. Parkinson. Evolutionary
Relationships of the Middle American Jumping Pitvipers (Genus
Atropoides) and Phylogeography of the Atropoides nummifer
complex. Herpetologica. 49:421-432. |
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2003
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Daniell, H. and C. L. Parkinson.
Jumping Genes and Containment. Nature Biotech. 21: 374-375. |
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2002
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Parkinson, C.L., P. Chippindale,
and J. Campbell. Multigene analyses of pitviper phylogeny
with comments on their biogeographical history. In Biology
of the Vipers (Ed by GW Schuett, M Höggren, ME Douglas,
and HW Greene). Eagle Mountain Publishing, LC. Eagle Mountain,
Utah. |
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2000
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Nickrent, D.L., C.L. Parkinson,
J.D. Palmer, and R.J. Duff. Multigene phylogeny of land
plants with special reference to Bryophytes and the earliest
land plants. Mol. Biol. Evol. 17: 1885-1895. |
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2000
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Palmer, J.D., K.L. Adams,
Y. Cho, C.L. Parkinson, Y.-L. Qiu and K. Song. Dynamic evolution
of plant mitochondrial genomes: Mobile genes and introns,
and highly variable mutation rates. Proc. Natl. Acad. Sci.
U. S. A. 97:6960-6966. |
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2000
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Parkinson, C.L., K.R. Zamudio,
and H.W. Greene. Phylogeography of the pitviper clade Agkistrodon:
historical ecology, species status, and conservation of
the cantils. Mol. Ecol. 9:411-420. |
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2000
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Chaw, S-M., C.L. Parkinson,
Y.Cheng, T.M. Vincent, and J.D. Palmer. Seed plant phylogeny
inferred from all three plant genomes: Monophyly of extant
Gymnosperms and origin of Gnetales from conifers. Proc.
Natl. Acad. Sci. U.S.A. 97:4086-4091. |
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2000
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Parkinson C.L., K.L. Adams,
and J.D. Palmer. Multigene analyses identify the three earliest
lineages of extant flowering plants. Current Biology 9:1485-1488.
Note:Featured Cover Article |
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1999
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Parkinson, C.L. The molecular
systematics and biogeography of the subfamily Crotalinae
as determined by mtDNA sequences. Copeia 1999(3) pp. 576-586.
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1998
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Adams, K.L., K. Song, Y.-L.
Qiu, A. Shirk, Y. Cho, C.L. Parkinson, and J.D. Palmer.
Evolution of flowering plant mitochondrial genomes: Gene
content, gene transfer to the nucleus, and highly accelerated
mutation rates. Pages 13-18 in Plant Mitochondria: From
Gene to Function (I.M. Moller, P. Gardestrom, K. Glimeliusand
E. Glaser eds.) Backhuys Publishers, Leiden, The Netherlands. |
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1997
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Parkinson, C.L., S.M. Moody,
and J.E. Ahlquist. Phylogenetic relationships of the "Agkistrodon
Complex" based on mitochondrial DNA sequence data. Pages
63-78 in Venomous Snakes: Ecology, Evolution and Snakebite
(R.S. Thorpe, W. Wüster and A. Malhotra, eds.) The Zoological
Society of London, Clarendon Press, Oxford. |
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